Asian-Pacific Aquaculture 2024

July 2 - 5, 2024

Surabaya, Indonesia

GENETIC PARAMETERS AND GENOTYPE BY ENVIRONEMTN INTERACTION OF HARVEST TRAITS FOR MALABAR RED SNAPPER Lutjanus malabaricus USING A 70K RED SNAPPER SNP ARRAY

Bing Liang* , Dean R. Jerry, Xueyan Shen, Celestine Terence, Maura Carrai , Vu Nguyen,  Maria G. Nayfa,  Kathiresan Purushothaman, Grace Loo, Shubha Vij, Jose A. Domingos

 

Tropical Futures Institute, James Cook University Singapore                                                                  149 Sims Drive, 387380, Singapore

 



One of the major aquaculture species farmed in Singapore and the region is Malabar red snapper ( Lutjanus malabaricus), which is attracting increasing interest due to  its favourable taste, unique red colour and premium prices . However, the quality of fingerlings supplied to the industry is inconsistent. Selective breeding for genetic improvement of production traits has been widely adopted  in many key aquaculture species as an approach to increase the quality and productivity of fingerlings. However, currently t here are  no selection programmes for Malabar red snapper and to inform future breeding programs it is essential to understand genetic parameters related to commercial traits of interest.  Therefore, t he present study estimated  genetic parameters  of harvest traits for Malabar red snapper  with the objective of providing useful information on future genetic improvement programmes of the species.

I n total 2,580 Malabar red snapper cultured at three different rearing sites (tanks in floating barge, sea-c ages and tanks in land-based facility)  were genotyped using  a newly developed Axiom  70k R ed S napper  SNP array, and their body weight (BW) , total length (TL) and  intensity of red colouration (CIELAB *a values) were measured before harvest when fish were 18 months old.  The  mean ( ± SD) of BW , TL and *a values  of all fish  samples were 632.2  ± 233.3 g ,  321.8 ± 68.4 mm and 5.2  ± 6.6, respectively . Heritabilities (h2), genetic correlations (rg ) and genotype by environment interactions (GxE) were estimated using BLUPF90 with  an  animal model and  using the  genomic relationship matrix. T he h2  for BW, TL and  *a  were 0.32 ± 0.04, 0.33 ± 0.04 and 0.03  ± 0.02, respectively . The  phenotypic and genetic correlation s  between BW and TL were 0. 94 ± 0.00 and 0.95 ± 0.01 , while there  was  no genetic correlation between  BW (nor TL) and red coloration These results  indicated  that the  harvest growth traits of Malabar red snapper can be improved via selective breeding programs . I n contrast,  the very low h2 of red colour suggests  that  environmental  factors  (e.g. dietary carotenoids ) rather than genetic effects  may be primarily responsible for the phenotypic variation observed in skin redness.  Moderate GxE  interactions were observed  BW  (0.50-0.60)  and TL (0.14-0.65) among the th ree rearing sites, suggest ing  that that a single breeding program may not deliver equal genetic gains for all farms alike, and that genomic selection algorithms should be trained on the rearing site where animals are to be farmed (sea- cages or tank-based systems).  In conclusion, the present study provided valuable information for the design of  future selective breeding programs for Malabar red snapper.