We present a first description of the distribution and characterization of epitheliocystis infections in brown trout (Salmo trutta) from the upper catchments of two major European
rivers, the Rhine and the Rhone. Overall, epitheliocystis was widely distributed, with
70% of the Rhine and 67% of the Rhone sites harboring epitheliocystis positive trout.
The epitheliocystis agents Candidatus Piscichlamydia salmonis and Candidatus
Clavichlamydia salmonicola could be identified in both catchments, although their
relative proportions differed from site to site. Additionally, in two rivers in the Rhine
catchment, a new species of Candidatus Similichlamydia was identified. Based on the
histology, infection intensity, and severity of pathological changes were significantly more
pronounced in mixed chlamydial infections, whereas single infections showed only low
numbers of cysts and mild pathology. Infections could be found over a wide range of
temperatures, which showed no correlation to infection prevalence or intensity.
Keyword: Candidatus Piscichlamydia salmonis, Candidatus Clavichlamydia salmonicola, Candidaatus Similichlamydia sp, epitheliocystus, surver, Switzerland, catchment.